Merge pull request #22 from BioJulia/2026-03-02-cons-formatting

fix formatting issues leading to deployment error

Author: danielle-pinto

rosalind/10-cons.md

@@ -11,85 +11,84 @@ rss_descr = "Solving Rosalind problem CONS — finding a consensus string from a
 
 > **The Problem**
 >
->   A matrix is a rectangular table of values divided into rows and columns.   
->   An m×n matrix has m rows and n columns.   
->   Given a matrix A, we write Ai,j.  
->   to indicate the value found at the intersection of row i and column j.  
-
->   Say that we have a collection of DNA strings,   
->   all having the same length n.   
->   Their profile matrix is a 4×n matrix P in which P1,    
->   j represents the number of times that 'A' occurs in the jth position of one of the strings,   
->   P2,j represents the number of times that C occurs in the jth position,   
->   and so on (see below).
-
->   A consensus string c is a string of length n
->   formed from our collection by taking the most common symbol at each position;   
->   the jth symbol of c therefore corresponds to the symbol having the maximum value 
->   in the j-th column of the profile matrix.     
->   Of course, there may be more than one most common symbol, 
->   leading to multiple possible consensus strings.  
+> A matrix is a rectangular table of values divided into rows and columns.   
+> An m×n matrix has m rows and n columns.   
+> Given a matrix A, we write Ai,j.  
+> to indicate the value found at the intersection of row i and column j.  
+
+> Say that we have a collection of DNA strings,   
+> all having the same length n.   
+> Their profile matrix is a 4×n matrix P in which P1,    
+> j represents the number of times that 'A' occurs in the jth position of one of the strings,   
+> P2,j represents the number of times that C occurs in the jth position,   
+> and so on (see below).
+
+> A consensus string c is a string of length n
+> formed from our collection by taking the most common symbol at each position;   
+> the jth symbol of c therefore corresponds to the symbol having the maximum value 
+> in the j-th column of the profile matrix.     
+> Of course, there may be more than one most common symbol, 
+> leading to multiple possible consensus strings.  
 >
->    ### DNA Strings
->    ```
->    A T C C A G C T
->    G G G C A A C T
->    A T G G A T C T
->    A A G C A A C C
->    T T G G A A C T
->    A T G C C A T T
->    A T G G C A C T
->    ```
+> **DNA Strings**
+> ```
+> A T C C A G C T 
+> G G G C A A C T 
+> A T G G A T C T 
+> A A G C A A C C 
+> T T G G A A C T 
+> A T G C C A T T 
+> A T G G C A C T 
+> ```
 >
->    ### Profile
->    ```
->    A   5 1 0 0 5 5 0 0
->	 C   0 0 1 4 2 0 6 1
->    G   1 1 6 3 0 1 0 0
->    T   1 5 0 0 0 1 1 6
->    ```
+> **Profile**
+> ```
+> A   5 1 0 0 5 5 0 0
+> C   0 0 1 4 2 0 6 1
+> G   1 1 6 3 0 1 0 0
+> T   1 5 0 0 0 1 1 6
+> ```
 >
->    ### Consensus	
->   ```A T G C A A C T```
+> **Consensus**  
+> ```
+> A T G C A A C T
+> ```
 >
->    **Given:**   
->    A collection of at most 10 DNA strings of equal length (at most 1 kbp) in FASTA format.
+> **Given:**   
+> A collection of at most 10 DNA strings of equal length (at most 1 kbp) in FASTA format.
 >
->    **Return:**
->    A consensus string and profile matrix for the collection. 
->    (If several possible consensus strings exist,   
->    then you may return any one of them.)
+> **Return:**
+> A consensus string and profile matrix for the collection. 
+> (If several possible consensus strings exist,   
+> then you may return any one of them.)
 >
->    **Sample Dataset***
->
->    ```
->    >Rosalind_1
->    ATCCAGCT
->    >Rosalind_2
->    GGGCAACT
->    >Rosalind_3
->    ATGGATCT
->    >Rosalind_4
->    AAGCAACC
->    >Rosalind_5
->    TTGGAACT
->    >Rosalind_6
->    ATGCCATT
->    >Rosalind_7
->    ATGGCACT
->    ```
->
->    **Sample Output** 
->    ```
->    ATGCAACT
->    ```
-> 
->    ```
->    A: 5 1 0 0 5 5 0 0
->    C: 0 0 1 4 2 0 6 1
->    G: 1 1 6 3 0 1 0 0
->    T: 1 5 0 0 0 1 1 6
->   ```
+> **Sample Dataset**
+> ```
+> >Rosalind_1
+> ATCCAGCT
+> >Rosalind_2
+> GGGCAACT
+> >Rosalind_3
+> ATGGATCT
+> >Rosalind_4
+> AAGCAACC
+> > Rosalind_5
+> TTGGAACT
+> >Rosalind_6
+> ATGCCATT
+> >Rosalind_7
+> ATGGCACT
+> ```
+> **Sample Output** 
+> ```
+> ATGCAACT
+> ```
+> ```
+> A: 5 1 0 0 5 5 0 0
+> C: 0 0 1 4 2 0 6 1
+> G: 1 1 6 3 0 1 0 0
+> T: 1 5 0 0 0 1 1 6
+> ```
 
 
 The first thing we will need to do is read in the input fasta.