dance/workflow_with_functions at main · OmicsML/dance · GitHub

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// Workflow
digraph {
	A [label="Filter Genes (mod1)
FilterGenesScanpyOrder
FilterGenesPlaceHolder
FilterGenesPercentile"]
	B [label="Filter Genes (mod2)
FilterGenesScanpyOrder
FilterGenesPlaceHolder
FilterGenesPercentile"]
	C [label="Align Mods"]
	D [label="Normalize (mod1)
NormalizePlaceHolder
tfidfTransform"]
	E [label="Normalize (mod2)
NormalizePlaceHolder
tfidfTransform"]
	F [label="Normalize with Options (mod1)
NormalizePlaceHolder
ColumnSumNormalize
ScTransform
Log1P
NormalizeTotal
NormalizeTotalLog1P"]
	G [label="Normalize with Options (mod2)
NormalizePlaceHolder
ColumnSumNormalize
ScTransform
Log1P
NormalizeTotal
NormalizeTotalLog1P"]
	H [label="Filter Genes by Variability (mod1)
HighlyVariableGenesLogarithmizedByMeanAndDisp
HighlyVariableGenesRawCount
FilterGenesNumberPlaceHolder
HighlyVariableGenesLogarithmizedByTopGenes
FilterGenesTopK
FilterGenesRegression"]
	I [label="Filter Genes by Variability (mod2)
HighlyVariableGenesLogarithmizedByMeanAndDisp
HighlyVariableGenesRawCount
FilterGenesNumberPlaceHolder
HighlyVariableGenesLogarithmizedByTopGenes
FilterGenesTopK
FilterGenesRegression"]
	J [label="Filter Cells (mod1)
FilterCellsScanpyOrder
FilterCellsPlaceHolder"]
	K [label="Filter Cells (mod2)
FilterCellsScanpyOrder
FilterCellsPlaceHolder"]
	L [label="Filter Common Cells (mod1, mod2)"]
	M [label="Filter Cells (meta1)
FilterCellsScanpyOrder
FilterCellsPlaceHolder"]
	N [label="Filter Cells (meta2)
FilterCellsScanpyOrder
FilterCellsPlaceHolder"]
	O [label="Filter Common Cells (meta1, meta2)"]
	P [label="Cell Feature Embedding (mod1)
CellPCA
CellSVD
GaussRandProjFeature
WeightedFeaturePCA
WeightedFeatureSVD
FeatureCellPlaceHolder"]
	Q [label="Cell Feature Embedding (mod2)
CellPCA
CellSVD
GaussRandProjFeature
WeightedFeaturePCA
WeightedFeatureSVD
FeatureCellPlaceHolder"]
	R [label="Set Config"]
	A -> B
	B -> C
	C -> D
	B -> E
	D -> F
	E -> G
	F -> H
	G -> I
	H -> J
	I -> K
	J -> L
	K -> L
	L -> M
	M -> N
	N -> O
	O -> P
	P -> Q
	Q -> R
}