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@GfellerLab

Cancer Immune Recognition Lab

Lab from David Gfeller from the University of Lausanne

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  1. SuperCell SuperCell Public

    Coarse-graining of large single-cell RNA-seq data into metacells

    R 99 15

  2. EPIC EPIC Public

    Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.

    R 85 22

  3. MixMHCpred MixMHCpred Public

    HLA-I ligand predictor

    Python 45 10

  4. MixMHC2pred MixMHC2pred Public

    HLA-II ligand predictor.

    C++ 45 11

  5. MixTCRpred MixTCRpred Public

    Predictor of TCR-epitope interactions

    Python 34 10

  6. PRIME PRIME Public

    PRedictor of IMmunogenic Epitopes

    C++ 29 4

Repositories

Showing 10 of 25 repositories
  • MixMHCpred Public

    HLA-I ligand predictor

    GfellerLab/MixMHCpred’s past year of commit activity
    Python 45 10 1 1 Updated Mar 19, 2026
  • SuperCell Public

    Coarse-graining of large single-cell RNA-seq data into metacells

    GfellerLab/SuperCell’s past year of commit activity
    R 99 GPL-3.0 15 5 2 Updated Feb 23, 2026
  • SuperCellMultiomicsHTAN Public
    GfellerLab/SuperCellMultiomicsHTAN’s past year of commit activity
    R 0 0 0 0 Updated Feb 12, 2026
  • SuperCellMultiomicsAnalyses Public

    Analysis of single-cell multiomics datasets using metacell tools

    GfellerLab/SuperCellMultiomicsAnalyses’s past year of commit activity
    0 MIT 0 0 0 Updated Feb 12, 2026
  • TANs_ATACseq_analyses Public
    GfellerLab/TANs_ATACseq_analyses’s past year of commit activity
    R 0 0 0 0 Updated Feb 9, 2026
  • MixTCRclean Public

    Tool to detect putative issues in TCR sequences data

    GfellerLab/MixTCRclean’s past year of commit activity
    R 0 0 0 0 Updated Dec 9, 2025
  • TEMPO Public

    TCR-epitope motif-based interaction predictor

    GfellerLab/TEMPO’s past year of commit activity
    1 0 1 0 Updated Nov 13, 2025
  • SuperSpot Public
    GfellerLab/SuperSpot’s past year of commit activity
    HTML 3 0 1 0 Updated Nov 6, 2025
  • MixTCRcross Public

    Predictor of TCR cross-reactivity between a pair of epitopes

    GfellerLab/MixTCRcross’s past year of commit activity
    R 0 0 0 0 Updated Oct 9, 2025
  • PRIME Public

    PRedictor of IMmunogenic Epitopes

    GfellerLab/PRIME’s past year of commit activity
    C++ 29 4 0 0 Updated Sep 24, 2025
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