Repositories list

• bio4j.github.com

  Public
  bio4j.com website

  HTML

  •00 forks•00 stars•00 issues•33 pull requests•Updated Oct 12, 2020Oct 12, 2020

• data.genbank

  Public
  GenBank feature table ADT and parsers

  Scala

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jan 26, 2017Jan 26, 2017

• release.generic

  Public
  Data import for standard open data

  Scala

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•99 issues•11 pull request•Updated Dec 19, 2016Dec 19, 2016

• bio4j

  Public
  Bio4j abstract model and general entry point to the project

  javabioinformaticsdatabase+ 17

  javabioinformaticsdatabasegraphproteinsproteingene-ontologyjava-8graph-databasencbi-taxonomy+ 10

  Java

  •

  GNU Affero General Public License v3.0

  •1919 forks•122122 stars•55 issues•11 pull request•Updated Dec 16, 2016Dec 16, 2016

• data.uniprot

  Public
  UniProt entry ADT and parsers

  Scala

  •

  GNU Affero General Public License v3.0

  •00 forks•11 star•66 issues•00 pull requests•Updated Nov 10, 2016Nov 10, 2016

• data.go

  Public
  Gene Ontology data ADT and parsers

  Scala

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated Nov 9, 2016Nov 9, 2016

• data.uniref

  Public
  UniRef data ADT and parsers

  Scala

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 9, 2016Nov 9, 2016

• data.enzyme

  Public
  ENZYME data ADT and flat file parser

  Scala

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•11 issue•00 pull requests•Updated Nov 5, 2016Nov 5, 2016

• angulillos

  Public
  Java 8 library for strongly typed graph data

  javaschemagraph+ 17

  javaschemagraphgraphsdata-modeltraversaljava8java-8graph-databasequery-dsl+ 10

  Java

  •

  GNU Affero General Public License v3.0

  •22 forks•88 stars•44 issues•00 pull requests•Updated Oct 29, 2016Oct 29, 2016

• release.titan

  Public
  Scala

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•22 issues•11 pull request•Updated Oct 18, 2016Oct 18, 2016

• angulillos-titan

  Public
  use Titan with a lot of angulillos

  javaschemagraph+ 12

  javaschemagraphjava8java-8graph-databasequery-dsljava-librarytinkerpopquery-language+ 5

  Java

  •

  GNU Affero General Public License v3.0

  •11 fork•44 stars•33 issues•00 pull requests•Updated Oct 16, 2016Oct 16, 2016

• xs4s

  Public
  XML Streaming for Scala

  Scala

  •

  Other

  •1313 forks•00 stars•00 issues•00 pull requests•Updated Jun 7, 2016Jun 7, 2016

• angulillos-neo4j

  Public
  use Neo4j with a lot of angulillos!

  Java

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•22 issues•00 pull requests•Updated May 16, 2016May 16, 2016

• bio4j-titan

  Public
  Titan-specific bio4j implementation

  Java

  •22 forks•77 stars•99 issues•00 pull requests•Updated Mar 14, 2016Mar 14, 2016

• modules

  Public
  Statika-based bio4j module system

  JavaScript

  •

  GNU Affero General Public License v3.0

  •00 forks•11 star•33 issues•00 pull requests•Updated Mar 11, 2016Mar 11, 2016

• bio4j-examples

  Public
  Bio4j usage examples

  Java

  •

  GNU Affero General Public License v3.0

  •11 fork•66 stars•11 issue•11 pull request•Updated Aug 31, 2015Aug 31, 2015

• bio4j-json

  Public
  JSON serialization related classes for Bio4j entities used in Java programs

  Java

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 15, 2015Apr 15, 2015

• bio4j-graphical-tools

  Public
  Java

  •

  GNU Affero General Public License v3.0

  •00 forks•11 star•22 issues•00 pull requests•Updated Mar 5, 2015Mar 5, 2015

• gsoc15

  Public
  project ideas for Google Summer of Code 2015

  00 forks•33 stars•22 issues•00 pull requests•Updated Feb 20, 2015Feb 20, 2015

• angulillos-dynamodb

  Public
  Scala

  •

  GNU Affero General Public License v3.0

  •00 forks•22 stars•00 issues•11 pull request•Updated Feb 1, 2015Feb 1, 2015

• angulillos-gremlin

  Public
  Java

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 9, 2014Dec 9, 2014

• bio4j-neo4j

  Public
  Neo4j-specific implementation of Bio4j

  Java

  •

  GNU Affero General Public License v3.0

  •22 forks•66 stars•33 issues•22 pull requests•Updated Dec 4, 2014Dec 4, 2014

• FOSDEM-2014

  Public
  slides from the two bio4j sessions in the graph processing devroom

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 8, 2014Oct 8, 2014

• el-grafo

  Public
  GSoC 2014 project - D3-based Bio4j data model visualization

  JavaScript

  •33 forks•44 stars•88 issues•22 pull requests•Updated Oct 1, 2014Oct 1, 2014

• exporter

  Public
  GSoC 2014 project

  Java

  •

  GNU Affero General Public License v3.0

  •33 forks•33 stars•00 issues•00 pull requests•Updated Aug 22, 2014Aug 22, 2014

• dynamograph

  Public
  GSoC 2014 project - a DynamoDB based graph DB

  Scala

  •

  GNU Affero General Public License v3.0

  •11 fork•44 stars•88 issues•33 pull requests•Updated Aug 18, 2014Aug 18, 2014

• dynamograph-ddwriter

  Public
  distributed writing code for dynamograph

  Scala

  •

  GNU Affero General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 17, 2014Aug 17, 2014

• model-service

  Public
  An http service to discover Bio4j doman model

  Scala

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 28, 2014Jun 28, 2014

• module-template.g8

  Public
  Giter8 template for a new Bio4j module

  Scala

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 7, 2014May 7, 2014

• blueprints

  Public
  Bio4j default Blueprints model implementation

  Java

  •

  GNU Affero General Public License v3.0

  •00 forks•11 star•00 issues•00 pull requests•Updated May 7, 2014May 7, 2014