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@nih-cfde Common Fund Data Ecosystem

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    58 repositories

    • icc-eval-core

      Public
      Tools for collecting and reporting CFDE metrics
      u54od036472
      u54od036472
      TypeScript
      •0•1•12•1•Updated Apr 17, 2026Apr 17, 2026

    • programets

      Public
      u54od036472u24ca289073
      u54od036472u24ca289073
      R
      •
      Other
      •0•2•1•1•Updated Dec 9, 2025Dec 9, 2025

    • data-distillery

      Public
      CFDE Data Distillery Partnership Project
      u24od038422r03od030600ot2od030162
      u24od038422r03od030600ot2od030162u2chl138346
      Rich Text Format
      •0•7•2•0•Updated Oct 1, 2025Oct 1, 2025

    • c2m2-assessment

      Public
      This application may be used for performing assessments on C2M2 datapackages
      Python
      •1•2•0•0•Updated Sep 30, 2025Sep 30, 2025

    • icc-eval-core-templates

      Public
      0•0•1•0•Updated Sep 4, 2025Sep 4, 2025

    • deriva-datapackage

      Public
      Use DERIVA DataPath queries on an offline Datapackage
      Python
      •1•0•0•0•Updated Jul 17, 2025Jul 17, 2025

    • icc-eval-coordination

      Public
      R
      •1•0•1•0•Updated Jul 15, 2025Jul 15, 2025

    • published-documentation

      Public
      HTML
      •7•3•3•1•Updated Nov 20, 2024Nov 20, 2024

    • icc-metrics-dictionary

      Public
      Metrics dictionary for cfde metrics
      TeX
      •0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

    • announcements

      Public
      A way for anyone in the group to quickly share announcements that are archived both in GitHub and our Announcements mailing list
      0•2•2•0•Updated Apr 29, 2024Apr 29, 2024

    • dashboard

      Public
      Files and documentation related to the CFDE project dashboards
      JavaScript
      •
      Other
      •0•0•6•1•Updated Apr 24, 2024Apr 24, 2024

    • organization

      Public
      Main repository for meta information about the organization
      Other
      •8•7•0•0•Updated Apr 12, 2024Apr 12, 2024

    • c2m2

      Public
      Technical specs and docs for CFDE Crosscut Metadata Model (C2M2)
      Python
      •1•0•1•0•Updated Feb 16, 2024Feb 16, 2024

    • training-and-engagement

      Public
      Materials for the Training and Engagement Website
      trainingbioinformatics
      trainingbioinformatics
      HTML
      •
      Other
      •10•25•0•0•Updated Jan 12, 2024Jan 12, 2024

    • cfde-submit

      Public
      Python
      •
      Apache License 2.0
      •9•1•0•0•Updated Oct 20, 2023Oct 20, 2023

    • cfde-ingest

      Public
      Python
      •1•0•0•0•Updated Oct 20, 2023Oct 20, 2023

    • cfde-deriva

      Public
      Collaboration point for miscellaneous CFDE-deriva scripts
      Python
      •
      Other
      •3•2•23•0•Updated Sep 21, 2023Sep 21, 2023

    • knowledge-base-deposit

      Public
      Scratch pad for
      BSD 3-Clause "New" or "Revised" License
      •1•0•1•1•Updated Sep 19, 2023Sep 19, 2023

    • update-content-registry

      Public
      Code and workflows for adding content to the content registry.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•10•7•Updated Sep 15, 2023Sep 15, 2023

    • deriva-action-provider

      Public
      Globus Automate action provider for DERIVA
      Python
      •
      Apache License 2.0
      •3•0•0•1•Updated May 1, 2023May 1, 2023

    • gene-expression-browser

      Public
      CFDE/GTEx gene expression browser prototype
      Vue
      •1•0•8•0•Updated Apr 18, 2023Apr 18, 2023

    • submission-workflow

      Public
      Python
      •0•0•6•0•Updated Apr 18, 2023Apr 18, 2023

    • dashboard-api

      Public
      Python
      •
      Other
      •0•0•12•0•Updated Apr 18, 2023Apr 18, 2023

    • 2023-april-all-hands-meeting

      Public
      Meeting at the Bethesdan, April 4/5, 2023.
      0•1•0•0•Updated Apr 5, 2023Apr 5, 2023

    • training-rstudio-binder

      Public
      Multi-purpose Rstudio binder for training events
      R
      •4•4•2•0•Updated Feb 15, 2023Feb 15, 2023

    • rfcs

      Public
      This is the repo for holding Request for Comments
      1•0•1•1•Updated Feb 2, 2023Feb 2, 2023

    • c2m2_cv_usage

      Public
      Generating Controlled Vocabulary from C2M2
      Python
      •0•0•0•1•Updated Jan 11, 2023Jan 11, 2023

    • public-website-content

      Public
      Collaboration / contribution space for the public website
      Other
      •1•0•4•0•Updated Dec 13, 2022Dec 13, 2022

    • helpdesk-collaboration

      Public
      0•1•5•0•Updated Nov 21, 2022Nov 21, 2022

    • C2M2syndatagenerator

      Public
      To create synthetic datasets for testing and demonstration
      R
      •1•0•1•0•Updated Nov 17, 2022Nov 17, 2022
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