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    • A Snakemake storage plugin for handling input and output via XRootD
      Python
      MIT License
      5200Updated Apr 17, 2026Apr 17, 2026
    • Snakemake Report Plugin to automatically create Nanopubs after workflow runs holding all metadata of that workflow
      Python
      MIT License
      0102Updated Apr 17, 2026Apr 17, 2026
    • This is the development home of the Snakemake wrapper repository, see
      Python
      210241634Updated Apr 17, 2026Apr 17, 2026
    • A Snakemake executor plugin for submitting jobs to a SLURM cluster
      Python
      MIT License
      5050404Updated Apr 17, 2026Apr 17, 2026
    • snakemake

      Public
      This is the development home of the workflow management system Snakemake. For general information, see
      Python
      MIT License
      6332.8k984122Updated Apr 16, 2026Apr 16, 2026
    • snakemake-workflow-catalog

      Public
      A statically generated catalog of available Snakemake workflows
      Python
      MIT License
      113621Updated Apr 14, 2026Apr 14, 2026
    • snakefmt

      Public
      The uncompromising Snakemake code formatter
      Python
      MIT License
      3118823Updated Apr 9, 2026Apr 9, 2026
    • snakemake-report-plugin-rocrate

      Public
      Snakemake Report Plugin to automatically create Workflow Run RO-Crate after workflow runs holding all metadata of that workflow
      MIT License
      0100Updated Apr 9, 2026Apr 9, 2026
    • Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.
      TypeScript
      MIT License
      182380Updated Apr 2, 2026Apr 2, 2026
    • snakemake-executor-plugin-slurm-jobstep

      Public
      A Snakemake executor plugin for running srun jobs inside of SLURM jobs (meant for internal use by snakemake-executor-plugin-slurm)
      Python
      MIT License
      6001Updated Apr 1, 2026Apr 1, 2026
    • A Github action for running a Snakemake workflow
      MIT License
      156202Updated Mar 27, 2026Mar 27, 2026
    • The snakemake-profiles repository is an effort to create configuration profiles for executing Snakemake in specific institutional cluster or compute environment…
      Shell
      MIT License
      2140Updated Mar 26, 2026Mar 26, 2026
    • Shell
      0100Updated Mar 26, 2026Mar 26, 2026
    • The interface for Snakemake report plugins.
      Python
      MIT License
      2421Updated Mar 25, 2026Mar 25, 2026
    • Utility functions and classes shared between Snakemake wrappers
      Python
      MIT License
      6412Updated Mar 24, 2026Mar 24, 2026
    • A Snakemake scheduler plugin that selects the first jobs that fit available resources.
      Python
      MIT License
      0000Updated Mar 24, 2026Mar 24, 2026
    • Python
      MIT License
      2863Updated Mar 20, 2026Mar 20, 2026
    • A Snakemake scheduler plugin using Mixed-Integer Linear Programming (MILP).
      Python
      MIT License
      0000Updated Mar 19, 2026Mar 19, 2026
    • A greedy Snakemake scheduler plugin.
      Python
      MIT License
      0000Updated Mar 19, 2026Mar 19, 2026
    • Snakemake storage plugin for donwloading input files from HTTP(s).
      Python
      MIT License
      4134Updated Mar 16, 2026Mar 16, 2026
    • This package provides a stable interface for interactions between Snakemake and its storage plugins.
      Python
      MIT License
      11243Updated Mar 16, 2026Mar 16, 2026
    • Common functions and classes for Snakemake and its plugins
      Python
      MIT License
      7065Updated Mar 13, 2026Mar 13, 2026
    • An automatically updated catalog of Snakemake plugins and their documentation
      Python
      MIT License
      10302Updated Mar 13, 2026Mar 13, 2026
    • GitHub action to facilitate posting release notes on Mastodon
      Python
      MIT License
      0002Updated Mar 13, 2026Mar 13, 2026
    • snakeface

      Public
      The snakemake interface, currently works like a notebook (under development)
      CSS
      Mozilla Public License 2.0
      62082Updated Mar 12, 2026Mar 12, 2026
    • deploy a snakemake pipeline directly from version control (under development)
      Python
      Mozilla Public License 2.0
      1325147Updated Mar 12, 2026Mar 12, 2026
    • A Snakemake software deployment plugin for using conda packages. Implemented using py-rattler.
      Python
      0223Updated Mar 10, 2026Mar 10, 2026
    • A stable interface for Snakemake software deployment plugins
      Python
      MIT License
      1010Updated Mar 10, 2026Mar 10, 2026
    • Run snakemake within a rootless container
      Python
      MIT License
      1201Updated Mar 10, 2026Mar 10, 2026
    • This package provides a stable interface for interactions between Snakemake and its executor plugins.
      Python
      MIT License
      1511104Updated Mar 9, 2026Mar 9, 2026
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